RUNIT TEST PROTOCOL--Tue Dec 6 13:20:55 2011

Number of test functions: 18

Number of errors: 0

Number of failures: 2

1 Test suite

Failures

Details

Test Suite: GenABEL unit testing

• Test file: runit.convert.snp.ped.R
  • test.convert.snp.ped: (0 checks) ... OK (0.12 seconds)
    
• Test file: runit.convert.snp.R
  • test.convert.snp: (4 checks) ... OK (1.49 seconds)
    
• Test file: runit.descriptives.trait.R
  • test.descriptives.trait: (1 checks) ... OK (0.43 seconds)
    
• Test file: runit.exports.R
  • test.exports: FAILURE !! (check number 8) Error in checkIdentical(xBack[, sameCode], dta[, sameCode]) : FALSE
    
• Test file: runit.findRelatives.R
  • test.findRelatives: (10 checks) ... OK (45.05 seconds)
    
• Test file: runit.impute2xxx_large.R
  • test.impute2xxx_large: (0 checks) ... OK (0.03 seconds)
    
• Test file: runit.impute2xxx.R
  • test.impute2databel: (23 checks) ... OK (1.15 seconds)
    
• Test file: runit.iterator.R
  • test.qtscore: (0 checks) ... OK (0 seconds)
    
  • test.summary_snp_data: (3 checks) ... OK (8.34 seconds)
    
• Test file: runit.mach2databel.R
  • test.mach2databel: (8 checks) ... OK (0.97 seconds)
    
• Test file: runit.merge.R
  • test.merge.bug1641: (0 checks) ... OK (0.17 seconds)
    
  • test.merge.bug1676: (2 checks) ... OK (0.2 seconds)
    
• Test file: runit.mmscore.R
  • test.exports: (1 checks) ... OK (0.65 seconds)
    
• Test file: runit.polygenic.R
  • test.polygenic.Bug1322: (2 checks) ... OK (1.05 seconds)
    
• Test file: runit.polylik.R
  • test.polylik: FAILURE !! (check number 4) Error in checkEquals(h2htNew$pgresidualY, h2htOld$pgresidualY) : Mean relative difference: 1.756053e-08
    
• Test file: runit.recodeChromosome.R
  • test.recodeChromosome: (8 checks) ... OK (0.19 seconds)
    
• Test file: runit.sortmap.internal.R
  • test.sortmap.internal.bug1673: (1 checks) ... OK (0 seconds)
    
• Test file: runit.strandModify.R
  • test.strandModify: (2 checks) ... OK (0.05 seconds)